Create Your Uploads Working Directory
-
Create a working directory for your submissions.
-
Within that working directory include the following:
a. A
datatypes.txt
file including a list of all of the NDA datatypes you plan to uploadb. A
subject_list.csv
file containing a list of the subjects and their sessions you plan to upload with the column headers bids_subject_id and bids_session_id, respectively.c. Scripts set up to run prepare.py and uploads.py on your system. Examples of what our team uses on MSI exist under the
utilities
directory inside this repository. -
Copy or create your YAML and JSON pair files within your working directory under
prepared_yamls
andprepared_jsons
directories, respectively.a. If these do not exist, see Create YAML and JSON Files for instructions on how to create them.
-
Include the lookup.csv for the data you are uploading inside your working directory.
a. If this does not exist, see Prepare the Lookup CSV for instructions on how to create it.
├── working directory
│ ├── prepared_yamls
│ ├── prepared_jsons
| ├── datatypes.txt
| ├── subject_list.csv
| ├── lookup.csv
| ├── run_prepare.sh
| ├── run_upload.sh